细菌分类表（按“界门纲目科属种”分类）生物分类总表生物病毒分类表古菌分类表细菌分类表原生生物分类表藻类分类表 (NCBI)真菌分类表植物分类表植物分类表 (NCBI)APG I、II、III克朗奎斯特分类动物分类表软体动物分类表环节动物分类表昆虫分类表鱼类分类表两栖动物分类表爬行动物分类表鸟类传统分类系统鸟类DNA分类系统鹦形目分类表哺乳动物分类表翼手目分类表• 1 酸杆菌门(Acidobacteria)o 1.1 酸杆菌纲(Acidobacteria)o 1.2 全噬菌纲(Holophagae)• 2 放线菌门(Actinobacteria)（高G+C革兰氏阳性菌）o 2.1 放线菌纲(Actinobacteria)• 3 产水菌门(Aquificae)o 3.1 产水菌纲(Aquificae)• 4 拟杆菌门(Bacteroidetes)o 4.1 拟杆菌纲(Bacteroidetes)o 4.2 黄杆菌纲(Flavobacteria)o 4.3 鞘脂杆菌纲(Sphingobacteria)o 4.4 纲未定• 5 衣原体门(Chlamydiae)o 5.1 衣原体纲(Chlamydiae)• 6 绿菌门(Chlorobi)o 6.1 绿菌纲(Chlorobia)•7 绿弯菌门(Chloroflexi)o7.1 厌氧绳菌纲(Anaerolineae)o7.2 暖绳菌纲(Caldilineae)o7.3 绿弯菌纲(Chloroflexi)•8 产金菌门(Chrysiogenetes)o8.1 产金菌纲(Chrysiogenetes)•9 蓝藻门(Cyanobacteria)o9.1 蓝藻纲(Cyanobacteria)•10 脱铁杆菌门(Deferribacteres)o10.1 脱铁杆菌纲(Deferribacteres)•11 异常球菌-栖热菌门(Deinococcus-Thermus) o11.1 异常球菌纲(Deinococci)•12 网团菌门(Dictyoglomi)o12.1 网团菌纲(Dictyoglomi)•13 纤维杆菌门(Fibrobacteres)o13.1 纤维杆菌纲(Fibrobacteres)•14 厚壁菌门(Firmicutes)（低G+C革兰氏阳性菌）o14.1 芽孢杆菌纲(Bacilli)o14.2 梭菌纲(Clostridia)o14.3 热石杆菌纲(Thermolithobacteria)•15 梭杆菌门(Fusobacteria)o15.1 梭杆菌纲(Fusobacteria)•16 芽单胞菌门(Gemmatimonadetes)o16.1 芽单胞菌纲(Gemmatimonadetes)•17 黏胶球形菌门(Lentisphaerae)o17.1 黏胶球形菌纲(Lentisphaerae)•18 硝化螺旋菌门(Nitrospirae)o18.1 硝化螺旋菌纲(Nitrospira)•19 浮霉菌门(Planctomycetes)o19.1 浮霉菌纲(Planctomycetacia)•20 海绵杆菌门(Poribacteria)*•21 变形菌门(Proteobacteria)o21.1 α-变形菌纲(Alphaproteobacteria)o21.2 β-变形菌纲(Betaproteobacteria)o21.3 δ-变形菌纲(Deltaproteobacteria)o21.4 ε-变形菌纲(Epsilonproteobacteria)o21.5 γ-变形菌纲(Gammaproteobacteria)•22 螺旋体门(Spirochaetes)o22.1 螺旋体纲(Spirochaetes)•23 柔膜菌门(Tenericutes)o23.1 柔膜菌纲(Mollicutes)•24 热脱硫杆菌门(Thermodesulfobacteria)o24.1 热脱硫杆菌纲(Thermodesulfobacteria)•25 热微菌门(Thermomicrobia)o25.1 热微菌纲(Thermomicrobia)•26 热袍菌门(Thermotogae)o26.1 热袍菌纲(Thermotogae)•27 疣微菌门(Verrucomicrobia)o27.1 丰祐菌纲(Opitutae)o27.2 疣微菌纲(Verrucomicrobiae)•28 门未定o28.1 纤线杆菌纲(Ktedonobacteria)酸杆菌门(Acidobacteria)酸杆菌纲(Acidobacteria)1.酸杆菌目(Acidobacteriales)1.酸杆菌科(Acidobacteriaceae)1.酸杆菌属(Acidobacterium)2.(Edaphobacter)3.(Terriglobus)全噬菌纲(Holophagae)1.石鳖杆菌目(Acanthopleuribacterales)1.石鳖杆菌科(Acanthopleuribacteraceae)1.石鳖杆菌属(Acanthopleuribacter)2.全噬菌目(Holophagales)1.全噬菌科(Holophagaceae)1.地发菌属(Geothrix)2.全噬菌属(Holophaga)放线菌门(Actinobacteria)（高G+C革兰氏阳性菌）放线菌纲(Actinobacteria)1.酸微菌亚纲(Acidimicrobidae)1.酸微菌目(Acidimicrobiales)1.酸微菌亚目(Acidimicrobineae)1.酸微菌科(Acidimicrobiaceae)1.酸微菌属(Acidimicrobium)2.(Iamiaceae)1.(Iamia)2.放线菌亚纲(Actinobacteridae)1.放线菌目(Actinomycetales)1.放线菌亚目(Actinomycineae)1.放线菌科(Actinomycetaceae)1.放线棒菌属(Actinobaculum)2.放线菌属(Actinomyces)3.隐秘杆菌属(Arcanobacterium)4.(Falcivibrio)5.动弯杆菌属(Mobiluncus)6.(Varibaculum)2.(Actinopolysporineae)1.(Actinopolysporaceae)1.(Actinopolyspora)3.(Catenulisporineae)1.(Actinospicaceae)1.(Actinospica)2.(Catenulisporaceae)1.(Catenulispora)4.棒杆菌亚目(Corynebacterineae)1.棒杆菌科(Corynebacteriaceae)1.(Bacterionema)2.(Caseobacter)3.棒杆菌属(Corynebacterium)4.(Turicella)2.迪茨氏菌科(Dietziaceae)1.迪茨氏菌属(Dietzia)3.分枝杆菌科(Mycobacteriaceae)1.分枝杆菌属(Mycobacterium) （含结核杆菌）4.诺卡氏菌科(Nocardiaceae)1.戈登氏菌属(Gordonia)2.(Micropolyspora)3.(Millisia)4.诺卡氏菌属(Nocardia)5.红球菌属(Rhodococcus)6.斯科曼氏菌属(Skermania)7.(Williamsia)8.(Smaragdicoccus)5.(Segniliparaceae)1.(Segniliparus)6.束村氏菌科(Tsukamurellaceae)1.束村氏菌属(Tsukamurella)5.弗兰克氏菌亚目(Frankineae)1.酸热菌科(Acidothermaceae)1.酸热菌属(Acidothermus)2.弗兰克氏菌科(Frankiaceae)1.弗兰克氏菌属(Frankia)3.地嗜皮菌科(Geodermatophilaceae)1.芽球菌属(Blastococcus)2.地嗜皮菌属(Geodermatophilus)3.(Modestobacter)4.(Kineosporiaceae)1.(Cryptosporangium)2.(Kineococcus)3.(Kineosporia)5.(Nakamurellaceae)1.(Humicoccus)2.(Nakamurella)3.(Quadrisphaera)6.孢鱼菌科(Sporichthyaceae)1.孢鱼菌属(Sporichthya)6.糖霉菌亚目(Glycomycineae)1.糖霉菌科(Glycomycetaceae)1.糖霉菌属(Glycomyces)2.(Stackerbrandtia)7.微球菌亚目(Micrococcineae)1.获山氏菌科(Beutenbergiaceae)1.获山氏菌属(Beutenbergia)2.乔治菌属(Georgenia)3.萨勒河菌属(Salana)2.博戈里亚湖菌科(Bogoriellaceae)1.博戈里亚湖菌属(Bogoriella)3.短杆菌科(Brevibacteriaceae)1.短杆菌属(Brevibacterium)4.纤维素单胞菌科(Cellulomonadaceae)1.纤维素单胞菌属(Cellulomonas)2.厄氏菌属(Oerskovia)3.(Tropheryma)5.(Dermabacteraceae)1.(Brachybacterium)2.(Dermabacter)6.(Dermacoccaceae)1.(Demetria)2.(Dermacoccus)3.(Kytococcus)7.(Dermatophilaceae)1.(Dermatophilus)2.(Kineosphaera)8.(Intrasporangiaceae)1.(Arsenicicoccus)2.(Humihabitans)3.(Intrasporangium)4.(Janibacter)5.(Knoellia)6.(Kribbia)7.(Lapillicoccus)8.(Ornithinicoccus)9.(Ornithinimicrobium)10.(Oryzihumus)11.(Serinicoccus)12.(Terrabacter)13.(Terracoccus)14.(Tetrasphaera)9.(Jonesiaceae)1.(Jonesia)10.(Microbacteriaceae)1.(Agreia)2.(Agrococcus)3.(Agromyces)4.(Aureobacterium)5.(Clavibacter)6.(Cryobacterium)7.(Curtobacterium)8.(Frigoribacterium)9.(Frondicola)10.(Gulosibacter)11.(Labedella)12.(Leifsonia)13.(Leucobacter)14.(Microbacterium)15.(Microcella)16.(Mycetocola)17.(Okibacterium)18.(Plantibacter)19.(Pseudoclavibacter)20.(Rathayibacter)21.(Rhodoglobus)22.(Salinibacterium)23.(Subtercola)24.(Yonghaparkia)25.(Zimmermannella)11.微球菌科(Micrococcaceae)1.(Acaricomes)2.节杆菌属(Arthrobacter)3.(Citricoccus)4.(Kocuria)5.微球菌属(Micrococcus)6.(Nesterenkonia)7.(Renibacterium)8.罗氏菌属(Rothia)9.口腔球菌属(Stomatococcus)10.刘志恒菌属(Zhihengliuella)12.(Promicromonosporaceae)1.(Cellulosimicrobium)2.(Isoptericola)3.(Myceligenerans)4.(Promicromonospora)5.(Xylanibacterium)6.(Xylanimonas)13.(Rarobacteraceae)1.(Rarobacter)14.(Sanguibacteraceae)1.血杆菌属(Sanguibacter)15.(Yaniaceae)1.(Yania)16.科未定1.(Actinotalea)2.(Demequina)3.(Phycicoccus)4.(Ruania)8.微单孢菌亚目(Micromonosporineae)1.微单孢菌科(Micromonosporaceae)1.(Actinocatenispora)2.(Actinoplanes)3.(Amorphosporangium)4.(Ampullariella)5.(Asanoa)6.(Catellatospora)7.(Catenuloplanes)8.(Couchiolanes)9.(Dactylosporangium)10.(Krasilnikovia)11.(Longispora)12.(Luedemannella)13.微单孢菌属(Micromonospora)14.(Pilimelia)15.(Planopolyspora)16.(Polymorphospora)17.(Salinispora)18.(Spirilliplanes)19.(Verrucosispora)20.(Virgisporangium)9.丙酸杆菌亚目(Propionibacterineae)1.(Nocardioidaceae)1.(Actinopolymorpha)2.(Aeromicrobium)3.(Friedmanniella)4.(Hongia)5.(Kribbella)6.(Marmoricola)7.(Micropruina)8.(Nocardioides)9.(Pimelobacter)10.(Propionicicella)11.(Propionicimonas)2.丙酸杆菌科(Propionibacteriaceae)1.河口微菌属(Aestuariimicrobium)2.(Arachnia)3.(Brooklawnia)4.(Granulicoccus)5.江氏菌属(Jiangella)6.(Luteococcus)7.(Microlunatus)8.丙酸杆菌属(Propionibacterium)9.(Propioniferax)10.(Propionimicrobium)11.(Tessaracocccus)10.(Pseudonocardineae)1.(Actinosynnemataceae)1.(Actinokineospora)2.(Actinosynnema)3.(Lechevalieria)4.(Lentzea)5.(Saccharothrix)6.(Umezawaea)2.(Pseudonocardiaceae)1.(Actinoalloteichus)2.(Actinobispora)3.(Amycolata)4.(Amycolatopsis)5.(Crossiella)6.(Faenia)7.(Goodfellowia)8.(Kibdelosporangium)9.(Kutzneria)10.(Prauserella)11.(Pseudoamycolata)12.(Pseudonocardia)13.(Saccharomonospora)14.(Saccharopolyspora)15.(Streptoalloteichus)16.(Thermobispora)17.(Thermocrispum)11.链霉菌亚目(Streptomycineae)1.链霉菌科(Sterptomycetaceae)1.(Actinopycnidium)2.(Actinosporangium)3.(Chainia)4.(Elytrosporangium)5.北里菌属(Kitasatoa)6.北里孢菌属(Kitasatospora)7.(Microellobosporia)8.(Streptacidiphilus)9.链霉菌属(Streptomyces)10.(Streptoverticillium) 12.(Streptosporangineae)1.(Nocardiopsaceae)1.(Nocardiopsis)2.(Streptomonospora)3.(Thermobifida)2.(Streptosporangiaceae)1.(Acrocarpospora)2.(Herbidospora)3.(Microbispora)4.(Microtetraspora)5.(Nonomuraea)6.(Planobispora)7.(Planomonospora)8.(Planotetraspora)9.(Sphaerisporangium)10.(Streptosporangium)11.(Thermopolyspora)3.(Thermomonosporaceae)1.珊瑚状放线菌属(Actinocorallia)2.(Actinomadura)3.(Excellospora)4.(Spirillospora)5.(Thermomonospora)2.双歧杆菌目(Bifidobacteriales)1.双歧杆菌科(Bifidobacteriaceae)1.(Aeriscardovia)2.(Alloscardovia)3.双歧杆菌属(Bifidobacterium)4.(Gardnerella)5.(Metascardovia)6.(Parascardovia)7.(Scardovia)2.科未定3.(Coriobacteridae)1.(Coriobacteriales)1.(Coriobacterineae)1.(Coriobacteriaceae)1.奇异菌属(Atopobium)2.(Collinsella)3.(Coriobacterium)4.(Cryptobacterium)5.(Denitrobacterium)6.(Eggerthella)7.(Olsenella)8.(Slackia)4.红色杆菌亚纲(Rubrobacteridae)1.红色杆菌目(Rubrobacterales)1.红色杆菌亚目(Rubrobacterineae)1.(Conexibacteraceae)1.(Conexibacter)2.(Patulibacteraceae)1.(Patulibacter)3.红色杆菌科(Rubrobacteraceae)1.红色杆菌属(Rubrobacter)4.(Solirubrobacteraceae)1.(Solirubrobacter)5.(Thermoleophilaceae)1.(Thermoleophilum)5.球形杆菌亚纲(Sphaerobacteridae)1.球形杆菌目(Sphaerobacterales)1.球形杆菌亚目(Sphaerobacterineae)1.球形杆菌科(Sphaerobacteraceae)1.球形杆菌属(Sphaerobacter) 产水菌门(Aquificae)产水菌纲(Aquificae)1.产水菌目(Aquificales)1.产水菌科(Aquificaceae)1.产水菌属(Aquifex)2.(Calderobacterium)3.(Hydrogenivirga)4.(Hydrogenobacter)5.(Hydrogenobaculum)6.(Thermocrinis)2.除硫杆菌科(Desulfurobacteriaceae)1.(Balnearium)2.除硫杆菌属(Desulfurobacterium)3.热弧菌属(Thermovibrio)3.(Hydrogenothermaceae)1.(Hydrogenothermus)2.(Persephonella)3.(Sulfurihydrogenibium)拟杆菌门(Bacteroidetes)拟杆菌纲(Bacteroidetes)1.拟杆菌目(Bacteroidales)1.拟杆菌科(Bacteroidaceae)1.(Acetomicrobium)2.(Anaerophaga)3.(Anaerorhabdus)4.拟杆菌属(Bacteroides)5.(Pontibacter)2.紫单胞菌科(Porphyromonadaceae)1.(Barnesiella)2.(Capsularis)3.(Dysgonomonas)4.(Hallella)5.(Odoribacter)6.(Oribaculum)7.(Paludibacter)8.(Parabacteroides)9.紫单胞菌属(Porphyromonas) （多译作“卟啉单胞菌”，但porphyro-应来源于希腊语“紫色”）10.(Proteiniphilum)11.(Tannerella)12.(Xylanibacter)3.普雷沃氏菌科(Prevotellaceae)1.普雷沃氏菌属(Prevotella) （或译作“普氏菌”）4.理研菌科(Rikenellaceae)1.(Alistipes)2.(Alkaliflexus)3.(Marinilabilia)4.(Petrimonas)5.理研菌属(Rikenella) （注：Riken是日语“理化学研究所”简称）5.科未定1.(Acetofilamentum)2.(Acetothermus)黄杆菌纲(Flavobacteria)1.黄杆菌目(Flavobacteriales)1.蟑螂杆状体科(Blattabacteriaceae)1.蟑螂杆状体属(Blattabacterium)2.(Cryomorphaceae)1.(Algoriphagus)2.(Brumimicrobium)3.(Crocinitomix)4.(Cryomorpha)5.(Fluviicola)6.李时珍菌属(Lishizhenia)7.(Owenweeksia)3.黄杆菌科(Flavobacteriaceae)1.(Actibacter)2.(Aequorivita)3.(Algibacter)4.(Aquimarina)5.(Arenibacter)6.伯杰菌属(Bergeyella)7.(Bizionia)8.碳酸噬胞菌属(Capnocytophaga) （注：多译作“二氧化碳噬纤维菌属”）9.噬纤维素菌属(Cellulophaga)10.金黄杆菌属(Chryseobacterium)11.(Cloacibacterium)12.(Coenonia)13.(Costertonia)14.(Croceibacter)15.独岛菌属(Dokdonia)16.东海菌属(Donghaeana)17.(Elizabethkingia)18.(Empedobacter)19.(Epilithonimonas)20.(Flaviramulus)21.黄杆菌属(Flavobacterium)22.(Formosa)23.泥滩杆菌属(Gaetbulibacter)24.泥滩微菌属(Gaetbulimicrobium)25.(Galbibacter)26.(Gelidibacter)27.(Gillisia)28.(Gilvibacter)29.革兰菌属(Gramella)30.(Kaistella)31.(Kordia)32.(Krokinobacter)33.(Lacinutrix)34.列文虎克菌属(Leeuwenhoekiella)35.(Lutibacter)36.(Maribacter)37.(Mariniflexile)38.(Marixanthomonas)39.(Mesonia)40.(Muricauda)41.(Myroides)42.(Nonlabens)43.(Olleya)44.(Ornithobacterium)45.(Persicivirga)46.(Pibocella)47.极地杆菌属(Polaribacter)48.冷弯菌属(Psychroflexus)49.(Psychroserpens)50.(Riemerella)51.(Robiginitalea)52.(Salegentibacter)53.(Sandarakinotalea)54.(Sediminibacter)55.(Sediminicola)56.世宗菌属(Sejongia)57.(Stanierella)58.(Stenothermobacter)59.(Subsaxibacter)60.(Subsaximicrobium)61.(Tamlana)62.(Tenacibaculum)63.(Ulvibacter)64.(Vitellibacter)65.(Wautersiella)66.(Weeksella)67.(Winogradskyella)68.丽水菌属(Yeosuana)69.(Zeaxanthinibacter)70.周氏菌属(Zhouia)71.(Zobellia)72.王祖农菌属(Zunongwangia) 鞘脂杆菌纲(Sphingobacteria)1.鞘脂杆菌目(Sphingobacteriales)1.泉发菌科(Crenotrichaceae)1.(Balneola)2.(Chitinophaga)3.泉发菌属(Crenothrix)4.(Rhodothermus)5.(Salinibacter)6.(Terrimonas)7.(Toxothrix)2.(Flammeovirgaceae)1.(Flammeovirga)2.(Flexithrix)3.(Perexilibacter)4.(Persicobacter)5.(Rapidithrix)6.(Sediminitomix)7.(Thermonema)3.屈挠杆菌科(Flexibacteraceae)1.(Adhaeribacter)2.(Aquiflexum)3.(Arcicella)4.(Belliella)5.(Chimaereicella)6.(Cyclobacterium)7.噬胞菌属(Cytophaga) （注：目前多称此属为“噬纤维菌属”，此处依拉丁文）8.(Dyadobacter)9.(Echinicola)10.(Effluviibacter)11.(Emticicia)12.(Fabibacter)13.(Flectobacillus)14.屈挠杆菌属(Flexibacter)15.(Hongiella)16.(Hymenobacter)17.(Larkinella)18.(Leadbetterella)19.(Marinicola)20.(Meniscus)21.(Microscilla)22.(Niastella)23.(Persicitalea)24.(Reichenbachiella)25.(Rhodonellum)26.(Roseivirga)27.(Runella)28.(Spirosoma)29.生孢噬胞菌属(Sporocytophaga)4.腐螺旋菌科(Saprospiraceae)1.(Aureispira)2.(Haliscomenobacter)3.(Lewinella)4.腐螺旋菌属(Saprospira)5.鞘脂杆菌科(Sphingobacteriaceae)1.(Mucilaginibacter)2.(Olivibacter)3.(Parapedobacter)4.(Pedobacter)5.(Pseudosphingobacterium)6.鞘脂杆菌属(Sphingobacterium)6.科未定1.(Niabella)纲未定1.(Flavisolibacter)2.(Fulvivirga)3.(Prolixibacter)4.(Segetibacter)衣原体门(Chlamydiae)衣原体纲(Chlamydiae)1.衣原体目(Chlamydiales)1.衣原体科(Chlamydiaceae)1.衣原体属(Chlamydia)2.嗜衣体属(Chlamydophila)2.副衣原体属(Parachlamydiaceae)1.新衣原体属(Neochlamydia)2.副衣原体属(Parachlamydia)3.芯卡体科(Simkaniaceae)1.芯卡体属(Simkania) （注：人名缩写简称，此处用音译）2.棍衣原体属(Rhabdochlamydia)*4.华诊体科(Waddliaceae)1.华诊体属(Waddlia) （注：WADDL为“华盛顿动物病诊断实验室”缩写）绿菌门(Chlorobi)绿菌纲(Chlorobia)1.绿菌目(Chlorobiales)1.绿菌科(Chlorobiaceae)1.臂绿菌属(Ancalochloris)2.绿棒菌属(Chlorobaculum)3.绿菌属(Chlorobium)4.绿爬菌属(Chloroherpeton)5.暗网菌属(Pelodictyon)6.突柄绿菌属(Prosthecochloris)绿弯菌门(Chloroflexi)厌氧绳菌纲(Anaerolineae)1.厌氧绳菌目(Anaerolineales)1.厌氧绳菌科(Anaerolineaceae)1.厌氧绳菌属(Anaerolinea)2.(Bellilinea)3.纤绳菌属(Leptolinea)4.(Levilinea)5.长绳菌属(Longilinea)暖绳菌纲(Caldilineae)1.暖绳菌目(Caldilineales)1.暖绳菌科(Caldilineaceae)1.暖绳菌属(Caldilinea)绿弯菌纲(Chloroflexi)1.绿弯菌目(Chloroflexales)1.绿弯菌科(Chloroflexaceae)1.绿弯菌属(Chloroflexus)2.绿线菌属(Chloronema)3.太阳发菌属(Heliothrix)4.玫瑰弯菌属(Roseiflexus)2.颤绿菌科(Oscillochloridaceae)1.颤绿菌属(Oscillochloris)2.爬管菌目(Herpetosiphonales)1.爬管菌科(Herpetosiphonaceae)1.爬管菌属(Herpetosiphon) 产金菌门(Chrysiogenetes) 产金菌纲(Chrysiogenetes)1.产金菌目(Chrysiogenales)1.产金菌科(Chrysiogenaceae)1.产金菌属(Chrysiogenes)蓝藻门(Cyanobacteria)蓝藻纲(Cyanobacteria)1.第一目（色球藻目(Chroococcales)）@1.第一科@1.管孢藻属(Chamaesiphon)@2.色球藻属(Chroococcus)@3.(Cyanobacterium)@4.(Cyanobium)@5.(Cyanothece)@6.蓝纤维藻属(Dactylococcopsis)@7.(Gloeobacter)@8.黏球藻属(Gloeocapsa)@9.黏杆藻属(Gloeothece)@10.微囊藻属(Microcystis)@11.原绿球藻属(Prochlorococcus)@12.原绿藻属(Prochloron)@13.聚球藻属(Synechococcus)@14.集胞藻属(Synechocystis)@2.第二目（宽球藻目(Pleurocapsales)）@1.第一科@1.(Cyanocystis)@2.(Dermocarpella)@3.(Stanieria)@4.异球藻属(Xenococcus)@2.第二科@1.拟色球藻属(Chroococcidiopsis)@2.黏囊藻属(Myxosarcina)@3.宽球藻属(Pleurocapsa)@3.第三目（颤藻目(Oscillatoriales)）@1.第一科@1.节螺藻属(Arthrospira)@ （包含商业化螺旋藻）2.(Borzia)@3.(Crinalium)@4.(Geitlerinema)@5.盐螺旋藻属(Halospirulina)6.(Leptolyngbya)@7.(Limnothrix)@8.鞘丝藻属(Lyngbya)@9.微鞘藻属(Microcoleus)@10.颤藻属(Oscillatoria)@11.(Planktothrix)@12.原绿发藻属(Prochlorothrix)@13.(Pseudanabaena)@14.螺旋藻属(Spirulina)@15.(Starria)@16.束藻属(Symploca)@17.束毛藻属(Trichodesmium)18.(Tychonema)@4.第四目（念珠藻目(Nostocales)）@1.第一科@1.鱼腥藻属(Anabaena)@2.项圈藻属(Anabaenopsis)@3.束丝藻属(Aphanizomenon)@4.(Cyanospira)@5.(Cylindrospermopsis)@6.筒孢藻属(Cylindrospermum)@7.节球藻属(Nodularia)@8.念珠藻属(Nostoc)@9.伪枝藻属(Scytonema)@2.第二科@1.眉藻属(Calothrix)@2.胶须藻属(Rivularia)@3.单歧藻属(Tolypothrix)@5.第五目（真枝藻目(Stigonematales)）@1.第一科@1.(Chlorogloeopsis)@2.费氏藻属(Fischerella)@3.(Geitleria)@4.(Iyengariella)@5.拟念珠藻属(Nostochopsis)@6.真枝藻属(Stigonema)@脱铁杆菌门(Deferribacteres) 脱铁杆菌纲(Deferribacteres)1.脱铁杆菌目(Deferribacterales)1.脱铁杆菌科(Deferribacteraceae)1.脱铁杆菌属(Deferribacter)2.(Denitrovibrio)3.(Flexistipes)4.地弧菌属(Geovibrio)5.(Mucispirillum)2.科未定1.暖发菌属(Caldithrix)2.(Synergistes)异常球菌-栖热菌门(Deinococcus-Thermus)异常球菌纲(Deinococci)1.异常球菌目(Deinococcales)1.异常球菌科(Deinococcaceae)1.异常杆菌属(Deinobacter)2.异常球菌属(Deinococcus)2.特吕珀菌科(Trueperaceae)1.特吕珀菌属(Truepera)2.栖热菌目(Thermales)1.栖热菌科(Thermaceae)1.海栖热菌属(Marinithermus)2.亚栖热菌属(Meiothermus)3.海洋栖热菌属(Oceanithermus)4.栖热菌属(Thermus)5.火山栖热菌属(Vulcanithermus)网团菌门(Dictyoglomi)网团菌纲(Dictyoglomi)1.网团菌目(Dictyoglomales)1.网团菌科(Dictyoglomaceae)1.网团菌属(Dictyoglomus)纤维杆菌门(Fibrobacteres)纤维杆菌纲(Fibrobacteres)1.纤维杆菌目(Fibrobacterales)1.纤维杆菌科(Fibrobacteraceae)1.纤维杆菌属(Fibrobacter)厚壁菌门(Firmicutes)（低G+C革兰氏阳性菌）芽孢杆菌纲(Bacilli)1.芽孢杆菌目(Bacillales)1.(Alicyclobacillaceae)1.(Alicyclobacillus)2.(Pasteuria)3.(Sulfobacillus)2.芽孢杆菌科(Bacillaceae)1.(Alkalibacillus)2.(Amphibacillus)3.(Anoxybacillus)4.芽孢杆菌属(Bacillus)5.(Caldalkalibacillus)6.(Cerasibacillus)7.(Exiguobacterium)8.(Filobacillus)9.(Geobacillus)10.(Gracilibacillus)11.(Halalkalibacillus)12.(Halobacillus)13.(Haloactibacillus)14.(Jeotgalibacillus)15.(Lentibacillus)16.(Lysinibacillus)17.(Marinibacillus)18.(Oceanobacillus)19.(Ornithinibacillus)20.(Paraliobacillus)21.(Paucisalibacillus)22.(Pelagibacillus)23.(Piscibacillus)24.(Pontibacillus)25.糖球菌属(Saccharococcus)26.(Salibacillus)27.(Salimicrobium)28.(Salinibacillus)29.(Salirhabdus)30.(Sasuginibacillus)31.(Tenuibacillus)32.(Terribacillus)33.(Thalassobacillus)34.(Ureibacillus)35.(Virgibacillus)36.(Vulcanibacillus)3.(Caryophanaceae)1.(Caryophanon)4.李斯特氏菌科(Listeriaceae)1.环丝菌属(Brochothrix)2.李斯特氏菌属(Listeria)5.(Paenibacillaceae)1.(Ammoniphilus)2.(Aneurinibacillus)3.(Brevibacillus)4.(Cohnella)5.(Oxalophagus)6.(Paenibacillus)7.(Thermicanus)8.(Thermobacillus)6.(Planococcaceae)1.(Filibacter)2.(Kurthia)3.(Planococcus)4.(Planomicrobium)5.(Sporosarcina)7.芽孢乳杆菌科(Sporolactobacillaceae)1.(Marinococcus)2.(Sinococcus)3.芽孢乳杆菌属(Sporolactobacillus)4.(Tuberibacillus)8.葡萄球菌科(Staphylococcaceae)1.孪生菌属(Gemella)2.(Joetgalicoccus)3.(Macrococcus)4.(Salinicoccus)5.葡萄球菌属(Staphylococcus)9.(Thermoactinomycetaceae)1.(Laceyella)2.(Mechercharimyces)3.(Planifilum)4.(Seinonella)5.(Shimazuella)6.(Thermoactinomyces)7.(Thermoflavimicrobium)10.(Turicibacteraceae)1.(Turicibacter)11.科未定1.(Pullulanibacillus)2.乳杆菌目(Lactobacillales)1.气球菌科(Aerococcaceae)1.(Abiotrophia)2.气球菌属(Aerococcus)3.(Dolosicoccus)4.(Eremococcus)5.(Facklamia)6.(Globicatella)7.(Ignavigranum)2.肉杆菌科(Carnobacteriaceae)1.(Agitococcus)2.(Alkalibacterium)3.(Allofustis)4.(Alloiococcus)5.(Atopococcus)6.(Atopostipes)7.肉杆菌属(Carnobacterium)8.德库菌属(Desemzia) （DSMZ，德国微生物与细胞保藏中心）9.(Dolosigranulum)10.(Granulicatella)11.(Isobaculum)12.(Lactosphaera)13.(Marinilactibacillus)14.(Trichococcus)3.肠球菌科(Enterococcaceae)1.(Atopobacter)2.(Catellicoccus)3.肠球菌属(Enterococcus)4.(Melissococcus)5.(Pilibacter)6.(Tetragenococcus)7.漫游球菌属(Vagococcus)4.乳杆菌科(Lactobacillaceae)1.乳杆菌属(Lactobacillus)2.(Paralactobacillus)3.片球菌属(Pediococcus)5.明串珠菌科(Leuconostocaceae)1.明串珠菌属(Leuconostoc)2.(Oenococcus)3.(Weissella)6.颤螺旋菌科(Oscillospiraceae)1.颤杆菌克(Oscillibacter)2.颤螺旋菌属(Oscillospira)7.链球菌科(Streptococcaceae)1.乳球菌属(Lactococcus)2.(Lactovum)3.链球菌属(Streptococcus)8.科未定1.(Acetoanaerobium)2.互营球菌属(Syntrophococcus) 梭菌纲(Clostridia)1.梭菌目(Clostridiales)1.梭菌科(Clostridiaceae)1.(Acetanaerobacterium)2.(Acetivibrio)3.(Acidaminobacter)4.(Alkaliphilus)5.(Anaerobacter)6.(Anaerotruncus)7.(Anoxynatronum)8.(Bryantella)9.(Caloramator)10.(Caloranaerobacter)11.(Caminicella)12.(Clostridiisalibacter)13.梭菌属(Clostridium)14.(Coprobacillus)15.(Dorea)16.(Ethanoligenens)17.(Faecalibacterium)18.(Fastidiosipila)19.(Garciella)20.(Gracilibacter)21.(Guggenheimella)22.(Hespellia)23.(Natronincola)24.(Oxobacter)25.(Parasporobacterium)26.八叠球菌属(Sarcina)27.(Soehngenia)28.(Sporacetigenium)29.(Sporobacter)30.(Subdoligranulum)31.(Tepidibacter)32.(Tepidimicrobium)33.(Thermobrachium)34.(Thermohalobacter)35.(Tindallia)2.优杆菌科(Eubacteriaceae)1.醋杆菌属(Acetobacterium)2.(Alkalibacter)3.(Anaerofustis)4.(Anaerovorax)5.优杆菌属(Eubacterium)6.(Mogibacterium)7.(Pseudoramibacter)3.太阳杆菌科(Heliobacteriaceae)1.太阳杆状菌属(Heliobacillus)2.太阳杆菌属(Heliobacterium)3.嗜日菌属(Heliophilum)4.(Heliorestis)4.毛螺旋菌科(Lachnospiraceae)1.(Acetitomaculum)2.(Anaerofilum)3.(Anaerostipes)4.丁酸弧菌属(Butyrivibrio)5.(Catenibacterium)6.(Catonella)7.粪球菌属(Coprococcus)8.(Johnsonella)9.(Lachnobacterium)10.毛螺旋菌属(Lachnospira)11.(Moryella)12.(Oribacterium)13.假丁酸弧菌属(Pseudobutyrivibrio)14.(Roseburia)15.瘤胃球菌属(Ruminococcus)16.(Shuttleworthia)17.(Sporobacterium)5.消化球菌科(Peptococcaceae)1.(Carboxydothermus)2.(Cryptanaerobacter)3.(Dehalobacter)4.(Desulfitobacterium)5.(Desulfonispora)6.(Desulfosporosinus)7.(Desulfotomaculum)8.(Pelotomaculum)9.消化球菌属(Peptococcus)10.(Syntrophobotulus)11.(Thermincola)12.(Thermoterrabacterium)6.消化链球菌科(Peptostreptococcaceae)1.(Anaerococcus)2.(Filifactor)3.(Finegoldia)4.(Fusibacter)5.(Gallicola)6.(Helcococcus)7.微单胞菌属(Parvimonas) （原名Micromonas）8.(Peptoniphilus)9.消化链球菌属(Peptostreptococcus)10.(Sedimentibacter)11.(Sporanaerobacter)12.(Tissierella)7.互营单胞菌科(Syntrophomonadaceae)1.(Aminiphilus)2.(Aminobacterium)3.(Aminomonas)4.(Anaerobaculum)5.(Anaerobranca)6.(Caldicellulosiruptor)7.(Carboxydocella)8.(Dethiosulfovibrio)9.(Pelospora)10.互营单胞菌属(Syntrophomonas)11.(Syntrophospora)12.互营热菌属(Syntrophothermus)13.(Thermaerobacter)14.(Thermanaerovibrio)15.(Thermohydrogenium)16.(Thermosyntropha)17.(Thermovirga)8.韦荣氏菌科(Veillonellaceae)1.(Acetonema)2.氨基酸球菌属(Acidaminococcus)3.(Allisonella)4.(Anaeroarcus)5.(Anaeroglobus)6.(Anaeromusa)7.(Anaerosinus)8.(Anaerovibrio)9.(Centipeda)10.(Dendrosporobacter)11.(Dialister)12.(Megamonas)13.(Megasphaera)14.光冈菌属(Mitsuokella)15.(Papillibacter)16.(Pectinatus)17.(Pelosinus)18.(Phascolarctobacterium)19.(Propionispira)20.(Propionispora)21.(Quinella)22.(Schwartzia)23.新月形单胞菌属(Selenomonas)24.鼠孢菌属(Sporomusa)25.(Sporotalea)26.(Succiniclasticum)27.(Succinispira)28.(Thermosinus)29.韦荣氏菌属(Veillonella)30.(Zymophilus)9.科未定1.(Anaerovirgula)2.(Dethiosulfatibacter)3.(Geosporobacter)4.(Howardella)5.(Proteiniborus)2.盐厌氧菌目(Halanaerobiales)1.盐厌氧菌科(Halanaerobiaceae)1.盐厌氧菌属(Halanaerobium)2.(Halocella)3.(Haloincola)4.(Halothermothrix)2.盐拟杆菌科(Halobacteroidaceae)1.(Acetohalobium)2.(Halanaerobacter)3.盐拟杆菌属(Halobacteroides)4.(Halonatronum)5.(Natroniella)6.(Orenia)7.(Selenihalanaerobacter)8.(Sporohalobacter)3.盐碱厌氧菌目(Natranaerobiales)1.盐碱厌氧菌科(Natranaerobiaceae)1.盐碱厌氧菌属(Natranaerobius)4.热厌氧杆菌目(Thermoanaerobacteriales)1.热厌氧杆菌科(Thermoanaerobacteriaceae)1.(Acetogenium)2.(Ammonifex)3.(Caldanaerobacter)4.(Carboxydibrachium)5.(Coprothermobacter)6.(Desulfovirgula)7.(Gelria)8.(Mahella)9.(Moorella)10.(Sporotomaculum)11.(Tepidanaerobacter)12.(Thermacetogenium)13.热厌氧单胞菌属(Thermanaeromonas)14.(Thermoanaerobacter)15.(Thermoanaerobium)16.(Thermoanaerobacterium)17.热厌氧菌属(Thermoanaerobium)18.(Thermobacteroides)19.(Thermosediminibacter)20.(Thermovenabulum)2.热脱硫菌科(Thermodesulfobiaceae)1.热脱硫菌属(Thermodesulfobium) 5.目未定1.(Desulfitibacter)2.(Symbiobacterium)热石杆菌纲(Thermolithobacteria)1.热石杆菌目(Thermolithobacterales)1.热石杆菌科(Thermolithobacteraceae)1.热石杆菌属(Thermolithobacter) 梭杆菌门(Fusobacteria)梭杆菌纲(Fusobacteria)1.梭杆菌目(Fusobacteriales)1.梭杆菌科(Fusobacteriaceae)1.梭杆菌属(Fusobacterium)2.(Ilyobacter)3.纤毛菌属(Leptotrichia)4.(Propionigenium)5.(Sebaldella)6.(Sneathia)7.(Streptobacillus)2.科未定1.(Cetobacterium)芽单胞菌门(Gemmatimonadetes)芽单胞菌纲(Gemmatimonadetes)1.芽单胞菌目(Gemmatimonadales)1.芽单胞菌科(Gemmatimonadaceae)1.芽单胞菌属(Gemmatimonas)黏胶球形菌门(Lentisphaerae)黏胶球形菌纲(Lentisphaerae)1.黏胶球形菌目(Lentisphaerales)1.黏胶球形菌科(Lentisphaeraceae)1.黏胶球形菌属(Lentisphaera)2.食物谷菌目(Victivallales)1.食物谷菌科(Victivallaceae)1.食物谷菌属(Victivallis)硝化螺旋菌门(Nitrospirae)硝化螺旋菌纲(Nitrospira)1.硝化螺旋菌目(Nitrospirales)1.硝化螺旋菌科(Nitrospiraceae)1.钩端螺菌属(Leptospirillum)2.硝化螺旋菌属(Nitrospira)3.磁杆菌属(Magnetobacterium)*4.热脱硫弧菌属(Thermodesulfovibrio) 浮霉菌门(Planctomycetes)浮霉菌纲(Planctomycetacia)1.浮霉菌目(Planctomycetales)1.浮霉菌科(Planctomycetaceae)1.(Blastopirellula)2.(Gemmata)3.(Isosphaera)4.小梨形菌属(Pirellula)5.浮霉菌属(Planctomycetes)6.红小梨形菌属(Rhodopirellula)7.(Schlesneria)2.科未定（均未能分离培养，见厌氧氨氧化菌）1.(Brocadia)*2.(Kuenenia)*3.(Scalindua)*海绵杆菌门(Poribacteria)*变形菌门(Proteobacteria)α-变形菌纲(Alphaproteobacteria)1.柄杆菌目(Caulobacterales)1.柄杆菌科(Caulobacteraceae)1.(Asticcacaulis)2.短波单胞菌属(Brevundimonas)3.柄杆菌属(Caulobacter)4.苯基杆菌属(Phenylobacterium)2.(Kordiimonadales)1.(Kordiimonadaceae)1.(Kordiimonas)3.短小盒菌目(Parvularculales)1.短小盒菌科(Parvularculaceae)1.短小盒菌属(Parvularcula)4.根瘤菌目(Rhizobiales)1.橙单胞菌科(Aurantimonadaceae)1.橙单胞菌属(Aurantimonas)2.(Fulvimarina)3.(Martelella)2.巴通体科(Bartonellaceae)1.巴通体属(Bartonella)3.(Rochalimaea)3.拜叶林克氏菌科(Beijerinckiaceae)1.拜叶林克氏菌属(Beijerinckia)2.(Chelatococcus)3.(Methylocapsa)4.(Methylocella)4.慢生根瘤菌科(Bradyrhizobiaceae)1.阿菲波菌属(Afipia)2.农单胞菌属(Agromonas)3.(Balneimonas)4.芽生杆菌属(Blastobacter)5.(Bosea)6.慢生根瘤菌属(Bradyrhizobium)7.硝化杆菌属(Nitrobacter)8.(Oligotropha)9.(Rhodoblastus)10.红假单胞菌属(Rhodopseudomonas) 5.布鲁氏菌科(Brucellaceae)1.布鲁氏菌属(Brucella)2.(Crabtreella)3.(Daeguia)4.支动菌属(Mycoplana)5.苍白杆菌属(Ochrobactrum)6.(Pseudochrobactrum)6.黏着杆菌科(Cohaesibacteraceae)1.黏着杆菌属(Cohaesibacter)7.生丝微菌科(Hyphomicrobiaceae)1.(Ancalomicrobium)2.(Angulomicrobium)3.水杆菌属(Aquabacter)4.芽绿菌属(Blastochloris)5.(Devosia)6.(Dichotomicrobium)7.(Filomicrobium)8.(Gemmiger)9.生丝微菌属(Hyphomicrobium)10.(Methylorhabdus)11.土微菌属(Pedomicrobium)12.突柄微菌属(Prosthecomicrobium)13.红微菌属(Rhodomicrobium)14.(Rhodoplanes)15.(Seliberia)8.甲基杆菌科(Methylobacteriaceae)。