网上生物信息学教程EMBL biocomputing tutorials/Embnetut/Gcg/index.html Plant genome dababase tutorial/pgdic生物信息学机NCBI/International Nucleotide Sequence Database Collaboration. /collab/EBI/USDA/Sanger Centre/北京大学生物信息学中心数据库信息发布及其它GenBank Release Notesftp:///genbank/gbrel.txtdbEST summary report/dbEST/dbESTsummarv.html EMBL release noteshttp://www.bio.unizh.ch/db/docu.html?data=emrel Eukaryotic promoter database release noteshttp://www.genome.ad.jp/dbget/dbget2.htmlKEGG release noteshttp://www.genome.jp/kegg/docs/relnote.html核苷酸数据库GenBank/dbEST/dbEST/index.htmldbSTS/dbSTS/index.htmldbGSS/dbGSS/index.htmlGenome (NCBI)/entrez/query.fcgi?db=Genome dbSNP/SNP/HTGS/HTGS/UniGene/UniGene/EMBL核苷酸数据库/emblGenome (EBI)/genomes/向EMBL数据库提交序列/embl/Submission/webin.htmlDDBJhttp://www.ddbj.nig.ac.jp/启动子数据库Eukaryotic promoter databasehttp://www.epd.isb-sib.ch/转录因子数据库FRANSFAC/pub/databases.htmlTFD基因分类数据库Gene Ontology (GO)蛋白质数据库SWISS-PROT或TrEMBL/swissprot/http://www.expasy.ch/sprot/PIR/pir/PRFhttp://www.prf.or.jp/PDBSTRhttp://www.genome.ad.jp/dbget-bin/www_bfind?pdbstr Prositehttp://www.expasy.ch/sprot/prosite.html结构数据库PDB/pdbNDB/NDB/ndb.html/DNA-Binding Protein Database/NDB/structure-finder/dnabind/index.html NMR Nucleic Acids Database/NDB/structure-finder/nmr/index.html Protein Plus Database/NDB/structure-finder/protein/index.html Swiss 3Dimagehttp://www.expasy.ch/sw3d/SCOP/scop/CATH/bsm/cath/酶、代谢和调控路径数据库KEGGhttp://www.genome.ad.jp/kegg/Enzyme Nomenclature Databasehttp://expasy.hcuge.ch/sprot/enzyme.htmlProtein Kinase Resource (PKR)/kinases/LIGANDhttp://www.genome.ad.jp/dbget/ligand.htmlWIT/WIT/EcoCyc/ecocyc/UM-BBD/umbbd/多种代谢路径数据库/stc-95/ResTools/biotools/biotools8.html基因调控路径数据库(TRANSPATH)http://transfac.gbf.de基因组数据库禾本科比较基因组GrainGeneBotanical Databases/botanicaldatabase.htmBotanical Data/calflora/batanical.html日本水稻基因组(RGP)http://rgp.dna.affrc.go.jp水稻物理图谱/projects/rice/fpc华大水稻基因组框架图欧洲水稻测序（第12染色体）s.frMaize genomeBarley genome/Research/barley/nabgmp.htm Forage grasses genomes//Topics/Species/Grasses/ Triticum genomes/index.shtmlArabidopsis genomeSoyBasehttp://129.186.26.94Alfalfa genomeCotton genomeGlycine max genome/PlantGDB/glycine_max.html /PlantGDBC. elegans genome藻类（Chlamydomonas）基因组/chlamy_genome粘菌（Dictyostelium）基因组Animal genomes (ArkDB)FlyBase/Mouse Genome Informatics/Saccharomyces Genome Database/多种基因组数据库/GenomeWeb文献数据库PubMed/PubMed/OMIM/Omim/Agricola/ag98/Rice Genetics Newsletter/newsletters/rice_genetics Proceedings of the National Academy of Sciences USA (PNAS) 关键词为基础的数据库检索Entrez/Entrez/Entrez Nucleotide Sequence Search/Entrez/nucleotide.htmlEntrez Protein Sequence Search/Entrez/protein.htmlSequence Retrieval System, Singapore.sg:80/srs5/Sequence Retrieval System, US:80/srs/srscSequence Retrieval System, UK/GetEntry Nucleotide & Protein Sequence Searchhttp://ftp2.ddbj.nig.ac.jp:8000/getstart-e.htmlDatabase Search with Key Wordshttp://ftp2.ddbj.nig.ac.jp:8080/dbsearch-e-new.htmlDBGET/LinkDBhttp://www.genome.ad.jp/dbget/dbget2.html序列为基础的数据库检索BLAST/BLAST/FASTA/fasta33/index.htmlBLITZ/bicsw/SSearchrs.fr/bin/ssearch-guess.cgiElectronic PCR/STS/Proteome analysis/proteome/多序列分析Clustal multiple sequence alignment:9331/multi-align/Options/clustalw. html BCM:9331/multi-align/multi-align.htmlEBI ClustalW analysis系谱分析PAUP/PAUP/EBI ClustalW analysisGCG package/PHYLIP/phylip.htmlMEGA/METREE/imegHennig86/~mes/hennig/software.htmlGAMBIT/mcdbio/Faculty/Lake/Research/Programs/ MacClade/macclade/macclade.html Phylogenetic analysis/stc-95/ResTools/biotools/biotools2.html ClustalXftp://ftp-igbmc.u-strasbg.fr/pub/ClustalXMEGA基因结构预测分析GENSCAN/GENSCAN.htmlhttp://bioweb.pasteur.fr/seqanal/interfaces/genscan-simple.html http://bioweb.pasteur.frGeneFinder/gf/gf.shtml/nucleo.htmlGene Feature Searches:9331/Grail/Grail-1.3/GrailEXP/grailexp/GeneMark/GeneMark/eukhmm.cgi/GeneMark/hmmchoice.html Veil/labs/compbio/veil.htmlAAT/aat.htmlGENEIDhttp://www.imim.es/GeneIdentification/Geneid/geneid_input.html Genlang/~sdong/genlang_home.html GeneParser/~eesnyder/GeneParser.htmlGlimmer/labs/compbio/glimmer.htmlMZEF/genefinderProcrustes/software/procrustes/基因分类GO Annotator/gofigure蛋白质结构预测分析Expasyhttp://www.expasy.ch/CBShttp://www.cbs.dtu.dkPredicting protein secondary structure:9331/pssprediction/pssp.html Predicting protein 3D Structureshttp://dove.embl-heidelberg.de/3D/Predicting protein structures:9331/seq-search/struc-predict.html其它分析工具和软件Putative DNA Sequencing Errors Checkhttp://www.bork.embl-heidelberg.de/Frame/MatInspectorhttp://www.gsf.de/cgi-bin/matsearch.plFastMhttp://www.gsf.de/cgi-bin/fastm.plWeb Signal Scanhttp://www.dna.affrc.go.jp/htdocs/sigscan/signal.htmlBCM Search Launcher:9331/seq-util/seq-util.html Webcutter/cutter/cut2.htmlTranslate DNA to proteinhttp://www.expasy.ch/tools/dna.htmlABIMhttp://www-biol.univ-mrs.fr/english/logligne.htmlsequence motifs:Pfam/Pfam//ProDomhttp://protein.toulouse.inra.fr/prodom.htmlPRINTS/bsm/dbbrowser/PRINTS/其它多种数据库、分析工具和生物信息学机构/stc-95/Restools/biotools多种数据库和分析工具/Tools/Comparative sequence analysishttp://www.bork.embl-heidelberg.de/功能基因组分析Transcription profiling technologies/ncicgap/expression_tech_info.html Protocols for cDNA array technology/pbrown/array.htmlData management and analysis of gene expression arrays/DIR/LCG/15k/HTML/Examples of commercially available filter arrays: GeneFiltersTM (Research Genetics)Gene Discovery Arrays (Genome Systems)AtlasTM Arrays (CLONTECH)资料来源：新浪博客（一抹新绿）/sll888。